* using log directory 'c:/Work/Courses/Courses/Current/666/Rpackages/Logreg.Rcheck' * using R version 2.15.1 (2012-06-22) * using platform: x86_64-pc-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'Logreg/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'LogReg' version '1.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking whether package 'LogReg' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... WARNING Non-standard license specification: Usual R licence. Standardizable: FALSE * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... WARNING plot: function(x, ...) plot.lrsurf: function(Y, X, b0, b1, ncl) See section 'Generic functions and methods' of the 'Writing R Extensions' manual. * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... WARNING prepare_Rd: LogReg-package.Rd:35-36: Dropping empty section \examples prepare_Rd: est.bes.Rd:7-9: Dropping empty section \description prepare_Rd: est.bes.Rd:28-30: Dropping empty section \details prepare_Rd: est.bes.Rd:31-37: Dropping empty section \value prepare_Rd: est.bes.Rd:44-46: Dropping empty section \note prepare_Rd: est.bes.Rd:41-43: Dropping empty section \author prepare_Rd: est.bes.Rd:38-40: Dropping empty section \references prepare_Rd: est.bes.Rd:50-52: Dropping empty section \seealso checkRd: (5) est.bes.Rd:0-89: Must have a \description prepare_Rd: expit.Rd:7-9: Dropping empty section \description prepare_Rd: expit.Rd:19-21: Dropping empty section \details prepare_Rd: expit.Rd:22-28: Dropping empty section \value prepare_Rd: expit.Rd:35-37: Dropping empty section \note prepare_Rd: expit.Rd:32-34: Dropping empty section \author prepare_Rd: expit.Rd:29-31: Dropping empty section \references prepare_Rd: expit.Rd:41-43: Dropping empty section \seealso checkRd: (5) expit.Rd:0-59: Must have a \description prepare_Rd: gbd.Rd:7-9: Dropping empty section \description prepare_Rd: gbd.Rd:37-39: Dropping empty section \details prepare_Rd: gbd.Rd:40-46: Dropping empty section \value prepare_Rd: gbd.Rd:53-55: Dropping empty section \note prepare_Rd: gbd.Rd:50-52: Dropping empty section \author prepare_Rd: gbd.Rd:47-49: Dropping empty section \references prepare_Rd: gbd.Rd:59-61: Dropping empty section \seealso checkRd: (5) gbd.Rd:0-88: Must have a \description prepare_Rd: logit.Rd:7-9: Dropping empty section \description prepare_Rd: logit.Rd:19-21: Dropping empty section \details prepare_Rd: logit.Rd:22-28: Dropping empty section \value prepare_Rd: logit.Rd:35-37: Dropping empty section \note prepare_Rd: logit.Rd:32-34: Dropping empty section \author prepare_Rd: logit.Rd:29-31: Dropping empty section \references prepare_Rd: logit.Rd:41-43: Dropping empty section \seealso checkRd: (5) logit.Rd:0-59: Must have a \description prepare_Rd: lr.loglike.Rd:7-9: Dropping empty section \description prepare_Rd: lr.loglike.Rd:28-30: Dropping empty section \details prepare_Rd: lr.loglike.Rd:31-37: Dropping empty section \value prepare_Rd: lr.loglike.Rd:44-46: Dropping empty section \note prepare_Rd: lr.loglike.Rd:41-43: Dropping empty section \author prepare_Rd: lr.loglike.Rd:38-40: Dropping empty section \references prepare_Rd: lr.loglike.Rd:50-52: Dropping empty section \seealso checkRd: (5) lr.loglike.Rd:0-75: Must have a \description prepare_Rd: plot.lrsurf.Rd:7-9: Dropping empty section \description prepare_Rd: plot.lrsurf.Rd:31-33: Dropping empty section \details prepare_Rd: plot.lrsurf.Rd:34-40: Dropping empty section \value prepare_Rd: plot.lrsurf.Rd:47-49: Dropping empty section \note prepare_Rd: plot.lrsurf.Rd:44-46: Dropping empty section \author prepare_Rd: plot.lrsurf.Rd:41-43: Dropping empty section \references prepare_Rd: plot.lrsurf.Rd:53-55: Dropping empty section \seealso checkRd: (5) plot.lrsurf.Rd:0-78: Must have a \description prepare_Rd: test.data.Rd:7-9: Dropping empty section \description prepare_Rd: test.data.Rd:19-21: Dropping empty section \details prepare_Rd: test.data.Rd:22-24: Dropping empty section \source prepare_Rd: test.data.Rd:25-27: Dropping empty section \references checkRd: (5) test.data.Rd:0-33: Must have a \description * checking Rd metadata ... OK * checking Rd cross-references ... WARNING Unknown package(s) '' in Rd xrefs * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'plot.lrsurf': 'plot.lrsurf' The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking PDF version of manual ... OK WARNING: There were 4 warnings. NOTE: There was 1 note. See 'c:/Work/Courses/Courses/Current/666/Rpackages/Logreg.Rcheck/00check.log' for details.